Scaffold 2199786176

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199786176
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30313
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (4.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030433	Metagenome / Metatranscriptome	185	Y
F033038	Metagenome	178	Y
F037226	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
2199944238	F030433	N/A	MANLFAKAKKSAPAKTTKAKDEKVRIAIEDKTFFDKIEKLEVLQDQMKVAKAKADMISDELRDLGKSEWAKLYDQTGKNPGSVMLEQVNAEDVAQLMFIPTDKYITITPERAEELQETYGAEIVEEETTFSFDSAMIEKYGEILSRLIEESDEIKDTDKEKIIKATTKYSVAKGTIDKFATYGDVNEVMDAVKPVVALKNVEIIKG
2199944249	F033038	N/A	MKWMKLFEDFKKNNEEGTLITQDDIIKCIKNRGLIYSTIVHDFPENKPEEGITPIDIDQDGLITVEIDGKQYNVDLNDVEKIEF
2199944257	F037226	N/A	MYDNESTKENQIHVSNEFVDIFSNFNVVTQVEKMKQLTKRELYLLLTVCLDKFSDEDPVVKHNLLPFKEEIMNIFDVQDDKDAIDSVLIDLITESGDKYIETDNIVYNDDQKLPEPLTKDQVRDAKINIINEN