Scaffold 2199786158

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199786158
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 79841
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (6.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006142	Metagenome / Metatranscriptome	380	Y
F045788	Metagenome / Metatranscriptome	152	Y
F103254	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
2199943512	F045788	N/A	MKHMINSLLLERNVENKNFSDDILYKVGMDNVRNNIEFYSDKTFTCESVIKELFIRGIINYIERNKFPCLEK
2199943519	F103254	N/A	MKIKPIKTLYDYNQAQKYLESIFHKELTEDESNDVAILEILMEEFERKGKVSKEDLVIEPLIDYVFDLVSNASQYEEEGILERGLKLGEEYGELSAEILKLAGYKRSLETKEQINYNILLESTDCLIMIFDIMTQMGFTKEQICDMSEKQVNKWLTNIEIK
2199943527	F006142	N/A	MKRKNKLILEFTEFNMQRMNPDSAAGAIGGVDDPSLSTNAFDKHADAIRQAMSRVNDILYNLAGTSAYKNLRSKLGLESQDIQKMKILRIVKSNSIFYDAYITFVIDDYEYWGVIENVMSPNPEFTSEVFKDFDLYQSKEWIIKIKGLIIKTIKSWLKPEPGMYKLLNDELYCYSTETGKQLKMDKGIEIELIRAHDNKMVVKYETDYYNLVGDNYIYFNWWFEKIEE