Scaffold 2199777845

Overview

Basic Information

• Taxon OID: 2199352003
• Scaffold ID: 2199777845
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5253
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060610	Metagenome	132	Y
F065376	Metagenome	127	Y
F079784	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
2199932377	F079784	N/A	MAARRVSKPRQVLDIIVKYWRPTIGSLVILSSVFALIFKQIGTETLAAIVAAMVAAGYIPKANDNG
2199932378	F060610	N/A	MDEGRDSTYTTIDEGCVVGIGCKVHTHHHTIHIEPQIVYQSMEKFTIFGRNYCTNQWGQTYELPAEEPMLEPQPMQQTYASDTITPSSSAFLLAPKPEAKIIIKPRTEFTEYKPTMDGPIMGMLLTFTIYLTVQWAWSSMGAWNNLYSELSACLRSSS
2199932385	F065376	N/A	MNAANIDNISEFYKALNSTEVLRAQSMIEGAPSIIEDKLTYDMSAESIKAANDAIKHIETNRKMVTLPLDTYKKSVMEVERDATAPLRAYIDQRKQMMIDYSNELAVKKAVADAKIAQDAADALKSAVTSDVSGIFATFTDATTTTTLELDHTKNIRISKKAEIVGEVDWATLLWTLMQAEMFDIQELLRKLPKAMEITNIAEIRGIELTEVKTQVIR