NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2199772869

Scaffold 2199772869


Overview

Basic Information
Taxon OID2199352003 Open in IMG/M
Scaffold ID2199772869 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1986
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014618Metagenome / Metatranscriptome261Y
F104439Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
2199925484F104439AGCAGGLLTLAYDGSMGLGVTQPQGVLLNIKQNISGSNVISASNLNRELLTLAYDGSMGLGVTQPQGVLLNIKQNISGSNVISASNLNREVLTLAYDGSMGLGVTQPQGVLLNIKQNISGSNVISASNLNREVLTLAYDGSMGLGVTQPQGVLLNIKQNISGSNVISASNLNRELLTLAYDGSMGLGVTQPQGVLLNIKQNISGSNVISASNLNRELLTLAYDGSMGLGVTQPQGVLLNIKQNISGSNVISASNLNREILTLAYDGSMGLGVTQPQGVLLNIKQNIVNSNVISASNLNRELLTLAYDGSMGLGVTQPQGVLLNIKQNISGSNVISASNLNRELLTLAYDGSMGLGVTQPQGVLLNIKQNIVNSNVISASNINRELLTLAYDGSMGLGVTQPQGVLLNIKQNISGSNVISASNLNREVLTLAYDGSMGLGVTQPQG
2199925485F014618N/AQPQGVLLNIKQNISGSNVISASNLNREVLTLAYDGSMGLGVTQPQGVLLNIKQNISGSNVISASNLNRELLTLAYDGSMGLGVTQPQGVLLNIKQNISGSNVISASNLNRELLTLAYDGSMGLGVTQPQGVLLNIKQNISGSNVISASNLNREILTLAYDGSMGLGVTQPQGVLLNIKQNIVNSNVISASNLNSELLTLAYDGSMGLGVTQPQGVLLNIKQVNC
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