Scaffold 2199731431

Overview

Basic Information

• Taxon OID: 2199352003
• Scaffold ID: 2199731431
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20680
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008936	Metagenome	325	Y
F024717	Metagenome	204	Y
F025680	Metagenome	200	N
F034061	Metagenome	175	N
F061497	Metagenome	131	Y
F065768	Metagenome	127	N
F070850	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
2199883082	F065768	GAG	MSVCSPCYDAGSYVNACLTEFTFGIVEADTEFTVWLQHNATQKIMQFTATSDAEGYITIEGIQLDPLQGYTIWVTIDGVEQDITVDGDIYKCLSFSAASVGQSPVVIP
2199883084	F025680	N/A	MKYIKELKGRLRSLLGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGAEMELILGEMEKALGAGLSNPKNAALIGAYIHVIRERQDTVIHRDILLNIAATWLVRDDEDPNIVNSDIHNYKLELFEQLSKGGAKDFFSSLGIDPLMPLLTMSPEDFQILWEYNLVQQRNLKDSLFRLSSHRESGRRKQETT
2199883090	F070850	GGAG	MTKELSQTTQSITPSTGVVLLAFGKPQYYWAAYNLAFSIRKHSPNVNITVLFDNPIKGISHCQDFMQYINNIGSIDADDIYTNKKLDPGKVKVNLYKYLPYDCNLYLDVDAIALKDIQPMIDELSQSGKNYISHCVGYHTIDKGRDFKEMQWAWADKMWAHFNLLESYVMPAINSSMQWIVKGSQAEAIYRTAKDLYFNNPIPIKELRMKWGGGQPDELYMNVALAIHGIDPALKTYSRNDGSEGGMIHFSMQRGLSFEKITENYYLQSYYGGAGFTPIFYINWLDRMLNADFKAIGKRHIYLISRISQNKYADGKR
2199883094	F008936	N/A	MASFDELVKQKIKLLETVPEEIATAAERTQRQAWRKLAPLLSEMDVDAQGNITQTEDNVRRIGLITEELNKVLAGGEYRAAVQSFLASIDEGVQLTDDIARKIDSTFEPDNVQRQLLAISKQNAINAFFGSGLRENVTQPFLEQLTANVAARAPLREAVKALQGVIEGTDANDGRLLANVRTTANTAQAIADRSYAAAVNEELGIEYFQYLGGEIPTTRPFCEHREGAVFHRKEIEAWGNGENSAGINDIRNGTWAGRIEGTDSRSIFTFVGGWNCRHFLVPVIKQRVPASVIARAKAEGYA
2199883098	F034061	N/A	MCYESLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITDQYNSGVELFEAKRAFAWRKMSTDILSRLTPMMKADTVVESKRIGQVVSNAANIDTMVGAGKYTGIRVTIDPNTESFLNFYLSNFKIDIYTMAVPVEIFVYDMTTLKLIDSFFYQSEAVEQFIGKTFKANRRKLDLAFVYESLYDTTKMIPKKGHCFDCSGNVRGAHICPFVDAVGIELTVSGDDVISSKSKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLTISPNQRVNTTVSVNTGFATSDPNDGMIAGRDIAATRYSEELTAMLQNMRLPSDNTCFDCRRNMKYVTALP
2199883099	F024717	N/A	MATPKEISDRINALFSDWNSGFTPLSFAVQDMRREMYIRIFGIDTGRGRNQAGNFLPTKPYTPAYAKIKAANGKPPLELTGFLKRSFATDQTTVVTEGFDTAIYTVADEAGKVEGLEKLYGTIFKPTAEEQSRMLQLHADLLVEQIANQISKP
2199883101	F061497	N/A	MIDITLEGGYVTFYTSVLGVIASNVELCEVVDENTLHLGTNVGTFLINVNQFTFNGIKFTDSTKAVNYILNN