Scaffold GS312G0146KB_1118463137808

Overview

Basic Information

• Taxon OID: 2189573027
• Scaffold ID: GS312G0146KB_1118463137808
• Source Dataset Name: Estuarine microbial communities from Columbia River, sample from CR-7km from mouth, GS312-FOS-0p8-CR7-chlmax
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of South Carolina
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 815
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Columbia River Transect 7 km from mouth (CR7)
• Coordinates
  • Lat. (^o): 46.167
  • Long. (^o): -124.158
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035721	Metagenome / Metatranscriptome	171	Y
F065790	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
GS312G0146KB_00471020	F065790	N/A	RFKNASVFESNLFGATVTEDCKIEESYVSKNVICENSYVFGKRGVFSGEMVGGIFRQGRATPLARFADNTEVIEIEKIK
GS312G0146KB_00471030	F035721	N/A	MARNKSWCNPDSQECLDALIKEINDDLTVGCQIPFTVPKKELAHIISRAKDYFYKIYEDSVEEMFIALPRSAWGEAAFRQGISHNDTTGANPNVLTEKDVNNPRGVVKMPSTVWAVNNVFQINGFSGEDGGFGDNSFSAGDPDFSLDKFIYSDVYGAGIGSEELMYYVINSKFIDNARQALQAQISYNYN