Scaffold PRSSG2_Sequence0000016035

Overview

Basic Information

• Taxon OID: 2189573022
• Scaffold ID: PRSSG2_Sequence0000016035
• Source Dataset Name: Soil microbial communities from Puerto Rico rain forest, that decompose switchgrass - feedstock-adapted consortia SG only
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2161
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → unclassified Methanosarcina → Methanosarcina sp. MSH10X1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Soil → Soil Microbial Communities From Puerto Rico Rain Forest, That Decompose Switchgrass

Source Dataset Sampling Location

• Location Name: Luquillo LTER tropical forest, Puerto Rico
• Coordinates
  • Lat. (^o): 18.3724
  • Long. (^o): -65.7166

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051098	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
PRSSG2_01619630	F051098	GAG	MIITPFYYCRNCRKLYPGNKLEIANAPIEKLVSAARYTLGSQEHIFRIGGKTIQLSDLHHCNDHEIGLANFIKIQITKEKKE