NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GZIGXIF02J6K9Q

Scaffold GZIGXIF02J6K9Q


Overview

Basic Information
Taxon OID2189573002 Open in IMG/M
Scaffold IDGZIGXIF02J6K9Q Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)521
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084195Metagenome / Metatranscriptome112N
F105763Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
FE1_00461200F105763N/ARLPPVGSFVWHVREGSFEGPELASAYRYHPFSVDEPEVGTDDVFLEGAGPWRVIDVQRTEVLVSDGNVLVVESAA
FE1_00461210F084195N/AMSAEYDVARQQRLRRALEAIADAYGFTGELRRERIGEWWLYPNSIGYDREQEIAHQHGLDVKFGKEQVDEFRQLVAEAER

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