NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GZR05M102F2MFM

Scaffold GZR05M102F2MFM


Overview

Basic Information
Taxon OID2189573001 Open in IMG/M
Scaffold IDGZR05M102F2MFM Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)514
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035022Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
FD2_04364120F035022N/AMDVLPGPADLLPDVGGAGSPLRRMLMREIGYVVRGFLTVRRDSLRVPLSGSLTVHADLDSGLFSGDLALRQSTISRAVLGASLFSATVQIEAESPVIGRVDPGGRMFAAVTVDAVIA

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