Scaffold GPBTN7E01CI3U7

Overview

Basic Information

• Taxon OID: 2189573000
• Scaffold ID: GPBTN7E01CI3U7
• Source Dataset Name: Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: 454 Life Sciences
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 531
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location

• Location Name: Rothamsted, Harpenden, UK
• Coordinates
  • Lat. (^o): 51.804241
  • Long. (^o): -0.372114
  • Depth (m): 0 to .21

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003359	Metagenome / Metatranscriptome	492	Y
F048812	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
N55_08231730	F048812	AGGA	LRRHQFETYLDKVFDFSARVRALPEGRRFQHSGKKIFDAVFLGAACQFPALHRIETECRQ
N55_08231740	F003359	GGA	MLPGSLWNGTGLWRGNCRCADGKNLHTQYQISVLVDGQPKTFNVPTALVQQVREHIELRKRFEAAADTICNINLRRFLKQKEKP