Scaffold G1P06HT01B36QT

Overview

Basic Information

• Taxon OID: 2170459014
• Scaffold ID: G1P06HT01B36QT
• Source Dataset Name: Litter degradation PV2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Illinois, Urbana-Champaign
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 511
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter → Switchgrass, Maize And Mischanthus Litter Microbial Communities From University Of Illinois Energy Farm, Urbana, Il

Source Dataset Sampling Location

• Location Name: University of Illinois Energy Farm
• Coordinates
  • Lat. (^o): 40.1097
  • Long. (^o): -88.2041

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016417	Metagenome / Metatranscriptome	247	Y

Sequences

Protein ID	Family	RBS	Sequence
2PV_04792380	F016417	N/A	MVLVSYKPTNTIVLGDLIVMVRHFLHAGNKCAILPGTEEPMTTTSEFITALF