NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GO6OHWN01C85VS

Scaffold GO6OHWN01C85VS


Overview

Basic Information
Taxon OID2170459013 Open in IMG/M
Scaffold IDGO6OHWN01C85VS Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)508
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013204Metagenome / Metatranscriptome273Y
F090033Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
N57_03870060F090033N/AMKIAHPKTNIRRTFLEKLCFDFMADIIAIELGFRQQ
N57_03870070F013204N/AVPNFGWNLGFNLLIDGRPAGSVVQGHTYSAWLPAGPHVLTVHKVPATGFTAPTSTTVNIQPGAEHLYTAMWDSGYVISSREEFC

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