Scaffold GOYVCMS02IWHHP

Overview

Basic Information

• Taxon OID: 2170459012
• Scaffold ID: GOYVCMS02IWHHP
• Source Dataset Name: Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grass
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: 454 Life Sciences
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 520
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location

• Location Name: Rothamsted, Harpenden, UK
• Coordinates
  • Lat. (^o): 51.804241
  • Long. (^o): -0.372114
  • Depth (m): 0 to .21

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037610	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
N56_06343950	F037610	AGG	MASSLAPNEIVGNRRDLMRVVVVRHHEEDSAGFIGAAFEARGATLSTLLYPKEGALPDTGALAHIVVLGSTSSVYDEGEARAWIGEEQ