Scaffold GIO7OMY02GJ9G5

Overview

Basic Information

• Taxon OID: 2170459010
• Scaffold ID: GIO7OMY02GJ9G5
• Source Dataset Name: Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: 454 Life Sciences
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 525
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location

• Location Name: Rothamsted, Harpenden, UK
• Coordinates
  • Lat. (^o): 51.804241
  • Long. (^o): -0.372114
  • Depth (m): 0 to .09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059833	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
F62_00312390	F059833	GAG	VGVPATGAKFYNVVGRLKNDTSHPLAYVKLRIDALDKAGAVVASTETYNESAEVLGVPDVDGRALLAEGKIKQLPPGGEERFRGSFLDEETPPFESYRVSVAETPAAK