NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GA8DASG02H08OL

Scaffold GA8DASG02H08OL


Overview

Basic Information
Taxon OID2170459009 Open in IMG/M
Scaffold IDGA8DASG02H08OL Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)505
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006077Metagenome / Metatranscriptome382Y
F015762Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
F47_04092490F006077N/AMVRIAICQAAFDAIARTLPLGSVGYENATNEKGERLIWLDRAVVDRLRHLRGPSESYSDVILRLAAEG
F47_04092500F015762N/AREEQLTWAKQRALICVDMGGFSDAVAGLRVDLAENPLTKGVMSSDQARRGYKAAIDAALGRGSQALTEWIEGFR

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