Scaffold GJ61VE201DJIE0

Overview

Basic Information

• Taxon OID: 2170459007
• Scaffold ID: GJ61VE201DJIE0
• Source Dataset Name: Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: 454 Life Sciences
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 525
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location

• Location Name: Rothamsted, Harpenden, UK
• Coordinates
  • Lat. (^o): 51.804241
  • Long. (^o): -0.372114
  • Depth (m): .1 to .21

Associated Families

Family	Category	Number of Sequences	3D Structure?
F095208	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
L02_05040450	F095208	N/A	VIGCVNDAPAPVVEIVSGAEVTTEVSVVGKLPDPREGLAPTPGTDDAAGAVVELTTDASSVGNRGAALPAAAGELSAPTMGDGSGFCGSPDSPVRFAFSNAAC