Scaffold GBPF9FW02HZP96

Overview

Basic Information

• Taxon OID: 2170459006
• Scaffold ID: GBPF9FW02HZP96
• Source Dataset Name: Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: 454 Life Sciences
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 540
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location

• Location Name: Rothamsted, Harpenden, UK
• Coordinates
  • Lat. (^o): 51.804241
  • Long. (^o): -0.372114
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043001	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
L01_02797740	F043001	N/A	SGRIAFGGNRAAMEFLNVATKDTDLSLRGEIDFQDTNNVTIKVNGAMPLFDLTQYPMGCMEKIELTSVPFTLAPAVAELEFCGGLFQPNWTIGLKDRTIGQSFYTPDPNGVSREFPLCFSGAGPERTKLVLAALPRPEAHPIATPRPKKTTTRRQ