NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JCVI_READ_1035314

Scaffold JCVI_READ_1035314


Overview

Basic Information
Taxon OID2166559018 Open in IMG/M
Scaffold IDJCVI_READ_1035314 Open in IMG/M
Source Dataset NameMarine microbial communities from the Atlantic Ocean, for comparison studies - Ocean6 (GOS4441574)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)985
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Environmental And Host-Associated → Microbial Communities From The Atlantic Ocean And Human Feces From France, Grouped Together For A Comparative Study

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009778Metagenome313Y

Sequences

Protein IDFamilyRBSSequence
Ocean6-_00335140F009778AGAAGMIKLKDLLFEKIAHTKKSLEWVSLDYIPMSPKVMKQIIGDTPITVFHNLNPDSIKNKLPKVIGKKKSISTYTTDTEGHLITGGGVQTSGGVVLEVEGKVLVAGTEDLGSVPDESGRRWIHPSTFGKIVGMKQFEGGGGGIYYRKHLYNFDKKLEDILWKYKTSLLKAPTDSAEDNARFPDYTGKQKADLIKRWIDASNKFLLKMKNTIKKSFMDNVNNPRITKFMSSYGYNELLVYDVKIKDAYIVFKYVGDP
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