Scaffold JCVI_READ_797746

Overview

Basic Information

• Taxon OID: 2166559017
• Scaffold ID: JCVI_READ_797746
• Source Dataset Name: Marine microbial communities from the Atlantic Ocean, for comparison studies - Ocean5 (GOS 4441573)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: 454 Life Sciences
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 964
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Environmental And Host-Associated → Microbial Communities From The Atlantic Ocean And Human Feces From France, Grouped Together For A Comparative Study

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011766	Metagenome	287	Y
F092221	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ocean5-_00142150	F092221	GGTGG	MAFEIKGFGEPSKFNFKSFKNFNNNPKKEGIYPRGSDGYQLESEVKFYNQDSLWTRWRRGYELYVMMQTILGSTSKERDRRGDYRLFFTFQQFPGVFIPARIFTFPSKNKELGEHVCGMRDTDGFSFYNFGLPILAVRYLAPSVDATYQQTGTTLVVTKTDHGLFPGDDVFLDISTGTGIDETSRDCK
Ocean5-_00142160	F011766	N/A	VNTETVTNINQFFPLFVASVDCSQQSYSLSEQKILPFINHPTVQAGANFGSANNALAPKQRGLMLKRGQALYVAASGATALTNGFYCNVQGGFY