Scaffold FI_contig14378

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold FI_contig14378

Scaffold FI_contig14378

Overview

Basic Information
Taxon OID	2166559006 Open in IMG/M
Scaffold ID	FI_contig14378 Open in IMG/M
Source Dataset Name	Grass soil microbial communities from Rothamsted Park, UK - FI (heavy metals 2g/kg) assembled
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	454 Life Sciences
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	850
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location Name	Rothamsted, Harpenden, UK
Coordinates	Lat. (^o)	51.804241	Long. (^o)	-0.372114	Alt. (m)		Depth (m)	0 to .21
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019407	Metagenome / Metatranscriptome	230	Y
F080565	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
FI_00445670	F080565	GGAGG	MPYATGETPEVGDYVKNQWEQPGRVTRVHFAQDEEDLVCIRWDDEGLKLLFSAASEYTLVFRKTA
FI_00445680	F019407	AGTAG	MPKHKVDDHVLVKLTGGRIVEATIKAIGDRTDGVRLQVSFGDETALVYLW

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