NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold FI_contig01901

Scaffold FI_contig01901


Overview

Basic Information
Taxon OID2166559006 Open in IMG/M
Scaffold IDFI_contig01901 Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - FI (heavy metals 2g/kg) assembled
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)2505
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071588Metagenome / Metatranscriptome122N
F087611Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
FI_00826460F087611AGGMSIPPSATARQSRNCSLCDVPYELGEVYQLVYAFIRKGGKLPVYARWIEGSVTPQT
FI_00826470F071588GGAVADGGIDMTDLQGVIGLLYRADWTGLSLAADVRSETDQDLLSSRVRAVKPSWVPEGRGRSSRGVYPEGGPPTWADAISEEPGGYHSWHARLLVAPGGRYRQEYLDEPSGRVIGSDGERSWVWHQQEPGPPIEVRHRPPLHQLLCPSELLGDFTLEVRGPVTACGREGIAVVATPRTGNEYVPRLNASTLSDHLEVIVDAELGILLRYEEAFAGQRLSLTELTAVVLDPPEVADLSRFAPPAGSRISQDPEESLREKRSGPAWEVEKTVAGLAAGGLGAAVRFAPRCPGRPGFSEDDLQSAMPPAEPAVLEAEGGPPPPDDLLYLLYRSGENPAFTATRDEWQDLSAMMAQLPDSMRAMGYGGFGYMIDSLAVVTRGKPVAHTVSRLRVAGRDKYRIDYLTRSGRNRAKTIACDGEHRWVVFAAQIMVGPAYPLSRDIASVVDSSWLLGCRLSGGAEVSYRGRRAYQLSVSSGRRRLAGGNAAVLPRRRDR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.