Scaffold cont_contig44934

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold cont_contig44934

Scaffold cont_contig44934

Overview

Basic Information
Taxon OID	2166559005 Open in IMG/M
Scaffold ID	cont_contig44934 Open in IMG/M
Source Dataset Name	Simulated microbial communities from Lyon, France
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	454 Life Sciences
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	894
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated → Simulated Microbial Communities From Lyon, France

Source Dataset Sampling Location
Location Name	Lyon, France
Coordinates	Lat. (^o)	45.7580538	Long. (^o)	4.7649095	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017809	Metagenome / Metatranscriptome	238	Y
F027582	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
cont_0934.00003230	F017809	GAG	MASDDDDPRAPYKVYEGDELKGTYATRAEARRAQQRLAESEPERNFVIRDLLGDVVS
cont_0934.00003240	F027582	N/A	LSEAIGEAGEMPHKFKIGTVVNYRPKDRMLSTARGTYTITGLMPAIEDKPPEYRIKHFSEEFERVAFENEIIAGESEHGQR

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