NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold cont_contig01120

Scaffold cont_contig01120


Overview

Basic Information
Taxon OID2166559005 Open in IMG/M
Scaffold IDcont_contig01120 Open in IMG/M
Source Dataset NameSimulated microbial communities from Lyon, France
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3139
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated → Simulated Microbial Communities From Lyon, France

Source Dataset Sampling Location
Location NameLyon, France
CoordinatesLat. (o)45.7580538Long. (o)4.7649095Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002699Metagenome536Y
F035025Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
cont_0120.00000140F035025N/AVILIETDVAGQAKTKEVKKSTDDPAEARNWLIGRLSEIHAGKYVGGIFDQKMVEVMMPSRTERLAVEVMMPSRTERLAFWRDEYALDSFTVLQRLLAFMFSQSQQRPQMRSWLTVSATVLYARPFKQWPEVRLAEDDVPIKYREVHKEVLKYRDKVVAHRDPDAHKRDVWRNELPIVSEGNNIFIPTTNLAMENDIAGSLLELVEILIPMLKARSSSFVSKYLPGPLAPGAYVLSLEENPAEWLTPVTPT
cont_0120.00000160F002699GGAGGMKISKFVWSVLVAFATVALIAPQQVEAVIVDGRVNGQIQLTGSGTITESTGINSNGINSNGINKLNFNGQNFPHGPLSVTNATGDFIPTVGSQANFNLPIRWTGSGSSVTLLDVFAWSILIPGDGFATATFFSLKSVTFDEDSLTLIGMGTTQLTSGDPLVQKDSAARIVIQGTGQDFT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.