Scaffold SwBSRL2_contig_9853828

Overview

Basic Information

• Taxon OID: 2162886013
• Scaffold ID: SwBSRL2_contig_9853828
• Source Dataset Name: Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 863
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location

• Location Name: East Lansing, MI
• Coordinates
  • Lat. (^o): 42.794771
  • Long. (^o): -84.393804

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024829	Metagenome / Metatranscriptome	204	Y
F027641	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
SwBSRL2_0112.00002630	F024829	GAG	VPLSSLDRRGIWILSGIGGFAVVLLATVLGVTWSRPIIGADNCVYRDKRFLSRAPTDQTVILVDQSEALTETHRRFALNFIKDFVADDSKFAVRSRIALFTFSK
SwBSRL2_0112.00002640	F027641	N/A	GYGELDRELIARRTSYEAAKAEYCRLVDQVFDRLLQEQARLLSDVKSNIEYYQQLVSRSVDERRTFVHDAAEIQDACNIVLKRYRQTNARVRQSPAPFYFNNSFTFDGHLIKPPEAISESEERLSQSYESAVKDFSDIARQNDATVQNLRTAEIRRRDYYFNKLERDIREKLIREAWEVK