Basic Information | |
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Taxon OID | 2162886012 Open in IMG/M |
Scaffold ID | MBSR1b_contig_8139017 Open in IMG/M |
Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4939 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Kellogg Biological Station, Michigan State University | |||||||
Coordinates | Lat. (o) | 42.406189 | Long. (o) | -85.40016 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F036462 | Metagenome / Metatranscriptome | 170 | Y |
F042607 | Metagenome | 158 | Y |
Protein ID | Family | RBS | Sequence |
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MBSR1b_0115.00004270 | F042607 | AGAAGG | MSIRIIDNKKVDVTEDEWAMYEKIVKSYTTDTNKGEDLFKDLFETDPNGIIIFLKPPSKFRTSFEVFLFLMSLMQHQHLRLMHSQVEEMVAQVKEKLKDK |
MBSR1b_0115.00004280 | F036462 | AGAAGG | MSQQVRLGDLLGSSSIEDFRSFDMTEVQEVLSHLRETDAIDLSHAEFLQQQALRGADILAEHLSKIVKTVAYLEAELNKTRNKVSLEYAAPDGARTTVDMKKWAGECSPEVVKVQEQLADAKGAKIALEKKFDILIKSHHHFKDIAAGLRRTILGYSSGTPDKVPEGYE |
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