Scaffold MBSR1b_contig_5205499

Overview

Basic Information

• Taxon OID: 2162886012
• Scaffold ID: MBSR1b_contig_5205499
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5989
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan State University
• Coordinates
  • Lat. (^o): 42.406189
  • Long. (^o): -85.40016

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047256	Metagenome	150	Y
F050721	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
MBSR1b_0107.00004670	F047256	AGGA	MAGVPDDERPFAAIRTRGRPWQITGVCLAGALLLVATWLHAATSGQGRAFGPGYVPYVLVTTGALTLALWGLWRMRPWAFWALPLAMAVDDGVVWAMGELRPGVVVAQTGVVLLVLLFRPRGSGWW
MBSR1b_0107.00004690	F050721	GAG	MSDDFQFPDPGVAADPLPEPLPRQRSTVVLPWVAAGLAVVTLAVVSLYAKKLIDEQAARAYQAMRMADEYGSRANKLEADQKDARRQAITSSEKSDEMRAANARLTEQVSDKDAALAHLKERHRQLVTDLRAAMKTTKGKALTKRVDKILARDAVAERAEASQTLTSQSPDAGTRRR