NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MBSR1b_contig_4611514

Scaffold MBSR1b_contig_4611514


Overview

Basic Information
Taxon OID2162886012 Open in IMG/M
Scaffold IDMBSR1b_contig_4611514 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4595
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan State University
CoordinatesLat. (o)42.406189Long. (o)-85.40016Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053880Metagenome140N
F066815Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
MBSR1b_0953.00004120F066815GGAGGMNTRLRIFATLAGALLAGHAAAVPTLKNVTPIFYQSGNGSLTAGLIVEASTSLPVLVIGGGFTITCTTSTLPQTAERFATFTGFLGVNESLRIPNVVPSTYSIPGWSSIPTGSCGGQCVMQYKGETRDETSLSVRVGSQNVGANFTLIPAGQQSVGNAMLVTICRSGQPQCCTRGCQLP
MBSR1b_0953.00004130F053880GGAGMEELNRLGASVSLLLALWAAAPIQAAPFDEKQRAPRVATSQALRTKLEAHFATFQRKQQDPDPAAFIRDAKAYRQWSDLYFSVQLAMDEKTPLKGLESFGLVAKPDGSYTVDLHAFPQWEPLDSRLHKLTNQEVLESFVPALKMRGFRDEDVSALRTYVATHDPRLALNTEGRQLVDTFAQRLQAQRKSGKQRADLQEVLAYRYQKSSLRTDVERRWAIGLMDALDPQRQRILVSYLDEFQAEMAFGVAHDDLAETLEREVQPIVSGDYVQILTTEEAKLRQDAERRTEQLNGGEQR

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