NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MBSR1b_contig_12417763

Scaffold MBSR1b_contig_12417763


Overview

Basic Information
Taxon OID2162886012 Open in IMG/M
Scaffold IDMBSR1b_contig_12417763 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1036
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan State University
CoordinatesLat. (o)42.406189Long. (o)-85.40016Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002113Metagenome592Y
F100588Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
MBSR1b_0803.00001260F100588N/AMLALFMFLGTIPTYAVERPFALKGTGVATLITDGSGHLIGAIPTGSGTATYLGQWTVTGNVAYTPDSNGVLHSSGDA
MBSR1b_0803.00001270F002113GAGMEDLLAIEAETKFLLTASDRSYEQTLMQELLRIFKEAELLFGPRDASYQLSIPRITECASSRTYILRPLGMTRIYLSRDSRTKPWLASLELAHEAVHVLSPASFGSGPTILEEGLAEWFAQRYVSRLHGMSFERGANPKADAVMRAVSNLLIKNELVIKILRTRQPVISKIGEKLLIEVTGVSLSDAKFLCTDFRSYWRT

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