NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SwRhRL2b_contig_3651045

Scaffold SwRhRL2b_contig_3651045


Overview

Basic Information
Taxon OID2162886007 Open in IMG/M
Scaffold IDSwRhRL2b_contig_3651045 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1115
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location NameEast Lansing, MI
CoordinatesLat. (o)42.794771Long. (o)-84.393804Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003759Metagenome / Metatranscriptome470Y
F051386Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
SwRhRL2b_0310.00000080F003759N/AMARLTIDRMPPGPKLDALTAEKVFGWQKVHKHQGALVGRKQDKAGRWRRAKVPNYSTNPLHSYSVENRMKQLGRSDRYQKELAKLTLSENIPSDWASPDQRCRAAIKAVGQYGRVIPLNRNRKQPQE
SwRhRL2b_0310.00000090F051386AGGMIFGFILAIGITVTLPYIAFAAARSFGGSRPMVHRQHSFSHPFNRFNRFGFVGVGGVVDEQPVIIIQQFQPAAAAQASEPAETRIYVQPRWVDGGFGVQVLQPGYWADPKQAEKR

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