Scaffold SwRhRL2b_contig_317135

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SwRhRL2b_contig_317135

Scaffold SwRhRL2b_contig_317135

Overview

Basic Information
Taxon OID	2162886007 Open in IMG/M
Scaffold ID	SwRhRL2b_contig_317135 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	2453
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location Name	East Lansing, MI
Coordinates	Lat. (^o)	42.794771	Long. (^o)	-84.393804	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002895	Metagenome	522	Y
F071761	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
SwRhRL2b_0410.00003180	F002895	N/A	VWRRYRHNESSDRYIQWQQLEDSMAQLCKENERTLHGCTHGSSRQIEKKVGHVRHYQKLVSTVCAIIAFLSVGPSLFAATAPSTYSAYSGTDAKPVPRAPALGPVNSVIRDPTFGSRILRVTDARSHGGNSLIPEYAGYFRTWNANSTALKLHGPWGTSYWLEFNPSTFKVGDGSSRPTLHPLSFDVKWEWSAVDPNIIYFINGTQLAKYNKSTHVVTNLGGRGVSLKYHVVVVGLDAWVCAAGPGTQNTYRQIFCLNPRNPSQTKFIDILKRTINGVYQSDPNWPTSAPYQTIGIHAMYGSATGTWLDVGFHRASWGAGGDSVFNLSTNKWSLMKANRYSSGHSSIGTRFVNGSGSINGMYSGGACLRNPSNLMDATRYTFIMQPPSTATGWHDGEHSSWFNASTNPHAPVLFSRYNISTPPRPVPWYGEIIAAATDGSNRVWRFAHNHNGGLVNWMGQSFAQISNDGRWALFSSPWDGTLGSAAGDFGYPTRIDTFIVELK
SwRhRL2b_0410.00003250	F071761	AGGAGG	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK

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