Scaffold SwRhRL3b_contig_1921062

Overview

Basic Information

• Taxon OID: 2162886006
• Scaffold ID: SwRhRL3b_contig_1921062
• Source Dataset Name: Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2250
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location

• Location Name: East Lansing, MI
• Coordinates
  • Lat. (^o): 42.794771
  • Long. (^o): -84.393804

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003994	Metagenome	458	Y
F032436	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
SwRhRL3b_0353.00001560	F003994	AGGAGG	MNQLQRERERTFLVQCIWCGAKIRDDKKEEAKGVCLKCFYQILSNHLRSQKRTAYGEFVSDR
SwRhRL3b_0353.00001580	F032436	GAG	MAISNELSSDVAVALLAKKKSPQELKKLKDIILEVHSALQKMSAEARTFRFRKKTQEVTKVTKARL