Scaffold STU__NODE_1845_len_6149_cov_19

Basic Information
Taxon OID	2149837023 Open in IMG/M
Scaffold ID	STU__NODE_1845_len_6149_cov_19_016262 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from the University of Arizona (HMP) - UAm1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chinese National Human Genome Center, Beijing
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

2149837023 Open in IMG/M

Scaffold ID

STU__NODE_1845_len_6149_cov_19_016262 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from the University of Arizona (HMP) - UAm1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chinese National Human Genome Center, Beijing

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6207
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

6207

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Source Dataset Sampling Location
Location Name	Arizona, USA
Coordinates	Lat. (^o)	32.23	Long. (^o)	-110.95	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Arizona, USA

Coordinates

Lat. (^o)

32.23

Long. (^o)

-110.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F043413	Metagenome	156	N
F055739	Metagenome	138	N

Family

Sequences

Protein ID	Family	RBS	Sequence
STU_0736.00000270	F055739	AGGAGG	MTEQQLREKLQFAYGNMPDATRAAFEHSLTHHRAPETHRSIGLSRTMRIVITAVLMALMLTAVGVAARFFSVTDVHPAQDGTEGDYQAHYLALEEQYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILFDENGQMPLEGKPIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAARHIITLTDAGVEDYLLEMCGAGWDEIEQISKADLLLRCGGFERAETYTVAFATEGNTQYVHPELAGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPNGTALPNGTALPDVWRIYRNDEQNPAGEAGWVRASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
STU_0736.00000290	F043413	AGGGGG	MTERELREKLQSAYGTMPDATRAAFEHSLTHHRVETRNPVRMSRRMRTIVTLALMLMMLMAVGVAAAKLASVTDYPPPSGLTPEYMSHLVALNEAYDGDLLTLSVNDLVFDGTTVDVAMNVQPKAGKQVFMDMEVTAECAGQTYTLEIEGCGGGDFMSGMFLPDGTGSWSDSPFGFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWEVEYLPDAQYQALLAGGADTLEAYVQNNWRQQIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADEYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGQTEAGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGERWDACHPDAEKGFTLELQE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold STU__NODE_1845_len_6149_cov_19_016262

Overview

Ecosystem & Geography

Associated Families

Sequences