Scaffold STU__NODE_400_len_8436_cov_19_801802

Overview

Basic Information

• Taxon OID: 2149837021
• Scaffold ID: STU__NODE_400_len_8436_cov_19_801802
• Source Dataset Name: Human fecal microbial communities from the University of Arizona (HMP) - UAf1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chinese National Human Genome Center, Beijing
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8494
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Source Dataset Sampling Location

• Location Name: Arizona, USA
• Coordinates
  • Lat. (^o): 32.23
  • Long. (^o): -110.95

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073573	Metagenome	120	N
F101192	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
STU_0387.00000060	F073573	AGGAGG	MPSIVSFYQRFPNEAPPLNLSAFDHTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSEGMLFQVRRMELRTGDTTYAILPDNVQQYTKRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIHRFCMDCEESAITYQPAFLWYKDYCTKA
STU_0387.00000090	F101192	GGGGG	MQTEPNDKEGRNMTYWGWLLVDIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKDAPTSFTPCGEDTIRRWVSGRYQIALRFNRYDICLGVEEEIDG