Scaffold STU__NODE_17276_len_3593_cov_16_952965

Overview

Basic Information

• Taxon OID: 2149837021
• Scaffold ID: STU__NODE_17276_len_3593_cov_16_952965
• Source Dataset Name: Human fecal microbial communities from the University of Arizona (HMP) - UAf1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chinese National Human Genome Center, Beijing
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3651
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Source Dataset Sampling Location

• Location Name: Arizona, USA
• Coordinates
  • Lat. (^o): 32.23
  • Long. (^o): -110.95

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056623	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
STU_0388.00002470	F056623	N/A	QARLTSETDPARRQLLHLLYAREAAALKSMTLVRAEIPAAQKRDWKPLIFPFAAAVLNLGALALWLTLPSCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADETEFRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLHAVGCEAVDYTPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG