NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold STU__NODE_18523_len_3547_cov_9_899351

Scaffold STU__NODE_18523_len_3547_cov_9_899351


Overview

Basic Information
Taxon OID2149837016 Open in IMG/M
Scaffold IDSTU__NODE_18523_len_3547_cov_9_899351 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from the University of Arizona (HMP) - Ef2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChinese National Human Genome Center, Beijing
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3575
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Source Dataset Sampling Location
Location NameBording, Denmark
CoordinatesLat. (o)56.13Long. (o)9.24Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078006Metagenome117N
F080673Metagenome115N

Sequences

Protein IDFamilyRBSSequence
STU_0766.00000660F080673N/AMDEIMELQDEALLYLRDNITKDEAYYILTTDKEMLAILIADKKDGSKRIKILDAEYTIEKDDMLFLFDTDGVIDECLLVASYIGINMYFRRQDANAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRIDDNKEKIDFMFVYFMARIL
STU_0766.00000710F078006N/AMDNILKRAAAELREAGCRVFAWQDDTYNRSWSKGDYIMLYYAFPDSPNIGYLSRGEYGMSVAYSRAYIPSRGSGSGCCIKEEATFDLATALDALNGPLPRWCKAYGVYPKQYDNIDKWYNSDNYNKKLFKEI

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