Scaffold Baltic_Sea__contig64995

Overview

Basic Information

• Taxon OID: 2149837002
• Scaffold ID: Baltic_Sea__contig64995
• Source Dataset Name: Marine microbial communities from the Baltic Sea
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Royal Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4676
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 59.888937
  • Long. (^o): 24.847412

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023494	Metagenome / Metatranscriptome	210	Y
F029603	Metagenome / Metatranscriptome	188	N

Sequences

Protein ID	Family	RBS	Sequence
Baltic_Sea_00120120	F023494	AGGTGG	MKGNAALNRAFISFPQLNRLVTTTNFIDKKSHLREQILIRSFKSNQLSKVKTKELG
Baltic_Sea_00120140	F029603	N/A	VVYTSTLGLISGEKSLKTFLPVDRGGKYAFIQIKASGYPQNLPKGPKCPKRYPQFSKSVGQQIPLPPALVAPNRSYAITSRPDQSQQLKLRAVFKGVREEDEAYFPAE