Scaffold Baltic_Sea__contig02807

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Baltic_Sea__contig02807

Scaffold Baltic_Sea__contig02807

Overview

Basic Information
Taxon OID	2149837002 Open in IMG/M
Scaffold ID	Baltic_Sea__contig02807 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Baltic Sea
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Royal Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2790
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	59.888937	Long. (^o)	24.847412	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026750	Metagenome / Metatranscriptome	197	Y
F044824	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Baltic_Sea_00601330	F026750	AGGAGG	MKLKRGFGRKDKIVIEHVDLDQLNLIVNGEKLTEARAAVMGAELAKKAHQILRLRQQK
Baltic_Sea_00601340	F044824	N/A	MKYRFAKSIGNYGISDESAAYLIENNQSFAVGLSREGNKKIAWVGFDQYGIRFECIAIVFIDALYIIHLKPIEAKEDIDEVKKRLW

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