NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold contig18053

Scaffold contig18053


Overview

Basic Information
Taxon OID2140918027 Open in IMG/M
Scaffold IDcontig18053 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Antarctic Deep Lake - 36m 3.0um, 0.8um, 0.1um pool
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)569
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location
Location NameDeep Lake Antarctica
CoordinatesLat. (o)-68.54Long. (o)78.18Alt. (m)Depth (m)36
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034412Metagenome175Y
F087964Metagenome110N
F089594Metagenome109N

Sequences

Protein IDFamilyRBSSequence
ADL36m2_02256190F089594N/ASWERVASWSVGAGSERQVIAAVCGSGIGDVLMELWFLFVWLDTLCE
ADL36m2_02256200F087964GGAVSSVVSAGIPFVMKVEALPPLWRGSVVFGEAQCGICCHVLCVSWVEHWILYIGG
ADL36m2_02256210F034412GAGGVIIGEAGDVCGSKFGVSKTEDWLGCPLLVDGFVCVGVGPLIKLFVMGCLWCVAECGCGGGVV

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