NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold contig06984

Scaffold contig06984


Overview

Basic Information
Taxon OID2140918027 Open in IMG/M
Scaffold IDcontig06984 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Antarctic Deep Lake - 36m 3.0um, 0.8um, 0.1um pool
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1228
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location
Location NameDeep Lake Antarctica
CoordinatesLat. (o)-68.54Long. (o)78.18Alt. (m)Depth (m)36
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014215Metagenome265Y
F020827Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
ADL36m2_04674480F014215GAGMTDKNADNDSTEMTDNDSTPTVNGSELDSVVGVANAFSYLDDPSNAGYISVRNLEDLVIIWSRETHFGHMYSLLEAQKQGHISIQSITAGTNPRGDPCLKIEVVGGNESDDDDTPTVKDVELDSVVGVANAFSYLDKMYNAGHITVRSSEDLAIIQSRRTHFRYMGELLEAQKQGHISIQHISTGTNRVNDPCLNIEFVGGDE
ADL36m2_04674490F020827N/AIVSTEYMMDLPPMVERGKRNQYQRGRATKYLRMKHDIAGWYEIGQLWKLWKDGQLRYFYIDHIHVLESDDPDNIKVRHYLSDGTMIDELTVTEGDIEEVINGSNIQPIDKPDHL

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