NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GQKUMWE01E4D4D

Scaffold GQKUMWE01E4D4D


Overview

Basic Information
Taxon OID2140918027 Open in IMG/M
Scaffold IDGQKUMWE01E4D4D Open in IMG/M
Source Dataset NameHypersaline microbial communities from Antarctic Deep Lake - 36m 3.0um, 0.8um, 0.1um pool
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)502
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location
Location NameDeep Lake Antarctica
CoordinatesLat. (o)-68.54Long. (o)78.18Alt. (m)Depth (m)36
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008667Metagenome330N

Sequences

Protein IDFamilyRBSSequence
ADL36m2_01779190F008667GGAGMTPGSADFRRANRNPSYQCLPRAEYVQRAVEMAPRGSQLAKKLTAHDVRAMRLNVHGRTDKHQAKVFGVSASMVYKIPKGERWGVVR*LSS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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