NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Contig_2921

Scaffold Contig_2921


Overview

Basic Information
Taxon OID2140918017 Open in IMG/M
Scaffold IDContig_2921 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Antarctic Deep Lake - 24m 0.8um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1977
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halohasta → unclassified Halohasta → Halohasta sp. GSL13(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location
Location NameDeep Lake Antarctica
CoordinatesLat. (o)-68.54Long. (o)78.18Alt. (m)Depth (m)24
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083454Metagenome113N

Sequences

Protein IDFamilyRBSSequence
ADL24m8uC_00984920F083454N/AMSDNTTIGLKVSHERNARIERKVDDAGYQSRQAYIRDLIDDDLGGFDTTVESATTQHTPEDRRDAEIYDALLDHIPLEGWTRFGRFKGGIAQSTGYPKDALFGELKSLRRTDSVRSES

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