NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NODE_5160_length_1494_cov_7.687417

Scaffold NODE_5160_length_1494_cov_7.687417


Overview

Basic Information
Taxon OID2140918013 Open in IMG/M
Scaffold IDNODE_5160_length_1494_cov_7.687417 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1526
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameIowa, USA
CoordinatesLat. (o)41.827222Long. (o)-93.008611Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100621Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Iowa-Corn-GraphCirc_00175520F100621GGAMPTSHPSTRRGSVRTLDRHVDLRDGVVPISDAAGYDAVRLYVTWFGEPVGTVRIPHHGAIVSRLWIEDAIAQQLTASVLDAGLHLGPQISKALLTADLVRYIASRWEPVMQGTTAPSTVRTAAA

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