Scaffold NODE_4065_length_1132_cov_5.795937

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold NODE_4065_length_1132_cov_5.795937

Scaffold NODE_4065_length_1132_cov_5.795937

Overview

Basic Information
Taxon OID	2140918013 Open in IMG/M
Scaffold ID	NODE_4065_length_1132_cov_5.795937 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1164
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	Iowa, USA
Coordinates	Lat. (^o)	41.827222	Long. (^o)	-93.008611	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027621	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Iowa-Corn-GraphCirc_00949730	F027621	AGGA	MNQHSNRGGQANGNNVDKVRRGATRPAAVVAILVSVGFAVAIVAIWPFRQPQSHQEMQAQPNAAVQTEIPEPEAVSGVSEPDRAVPPEPSSATPVSQANPAARQLMDDHVNSPTSVQGSPTPVEDDQSYTFSHDLNEETITFEAVNPKTQVAGLMTVTITGTFRGKRLWDGQSAVGSHLQGDAQATFSFVPYYPYSPSYSAVRRLQLAGDTTDDSIYVDLKIRATGSDGSIQSFVLREVVIATEDGAQIAFQQVKLPAVLNGQE

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