Scaffold NODE_175881_length_2453_cov_10.671423

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold NODE_175881_length_2453_cov_10.671423

Scaffold NODE_175881_length_2453_cov_10.671423

Overview

Basic Information
Taxon OID	2140918013 Open in IMG/M
Scaffold ID	NODE_175881_length_2453_cov_10.671423 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2485
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	Iowa, USA
Coordinates	Lat. (^o)	41.827222	Long. (^o)	-93.008611	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023379	Metagenome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Iowa-Corn-GraphCirc_02743810	F023379	AGGAGG	MTNHTAIADVDADIRWRDWLARGAAGDRRTAARMRTVMLLLVAGLIVSFVYQLT

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