NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold contig06809

Scaffold contig06809


Overview

Basic Information
Taxon OID2140918002 Open in IMG/M
Scaffold IDcontig06809 Open in IMG/M
Source Dataset NameRhizosphere and bulk soil microbial communities from the Great Lakes - Sample MSB1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1384
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Unclassified → Rhizosphere And Bulk Soil → Rhizosphere And Bulk Soil Microbial Communities From The Great Lakes

Source Dataset Sampling Location
Location NameRose Lake, Michigan, USA
CoordinatesLat. (o)44.0647Long. (o)-85.3817Alt. (m)Depth (m)32
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087961Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
MSB1_00107150F087961N/ALKLEETAKGVRISVHVYTNGKYTAINEAIATYLETKQMCEKEKIQIAPMEKSK

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