NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KansclcFeb2_ConsensusfromContig527773

Scaffold KansclcFeb2_ConsensusfromContig527773


Overview

Basic Information
Taxon OID2124908045 Open in IMG/M
Scaffold IDKansclcFeb2_ConsensusfromContig527773 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1326
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameKansas, USA
CoordinatesLat. (o)39.1049Long. (o)-96.6054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038222Metagenome / Metatranscriptome166Y
F039616Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
KansclcFeb2_12471900F039616N/AMDLGYGLTETVQFELPDLAGAARLATLLRSRWAVSVNEEDDVALVDVYIRLSRTDLASLMRTVEDWVARESLRAIRFELDGRVYILESGEVDWAFVPRPTVEAEAA
KansclcFeb2_12471910F038222N/AMSTPRKRPRIADSAGRAAFYPARVAARAWRGGIESAAEDVVSAPEIARIVDRALAGPLPEEIARSLVRHRVIERVVRELAASGELERLIQESLDSRQTLEVTERVLASEEMQRVLESIASSPELRRAVTRQSAGL
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