Scaffold KansclcFeb2_ConsensusfromContig505785

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold KansclcFeb2_ConsensusfromContig505785

Scaffold KansclcFeb2_ConsensusfromContig505785

Overview

Basic Information
Taxon OID	2124908045 Open in IMG/M
Scaffold ID	KansclcFeb2_ConsensusfromContig505785 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5380
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	Kansas, USA
Coordinates	Lat. (^o)	39.1049	Long. (^o)	-96.6054	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051503	Metagenome / Metatranscriptome	144	Y
F074835	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
KansclcFeb2_12711080	F051503	GAGG	MSKKRGVLVWVLFALATILLLVSSLTVWAKRQLLDDQAWANSSTQLLANDEVRGAIAQKLSDALFQRVDVEAQLRERLPAQRKGTAAVLAAALQNTVVPTAADRLLQRPRVQALWENANKRAHAAVL
KansclcFeb2_12711090	F074835	N/A	VLGAAWLAIGAGLLVALMVRAGKVTGWRWWRVFTAGAEETSKELERARAEAEQAVRETLMQLAPAISVEIATAAVPIAGDMAGDVAEAGQDLLETSDEMVEAMAEDLPGDGVVNQMWDVVLVPGRLGLRVATTVLERGETRD

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