NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold A5_c1_ConsensusfromContig60313

Scaffold A5_c1_ConsensusfromContig60313


Overview

Basic Information
Taxon OID2124908044 Open in IMG/M
Scaffold IDA5_c1_ConsensusfromContig60313 Open in IMG/M
Source Dataset NameSoil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)804
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m).3 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090975Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
A5_c1_00452800F090975AGGAGMSFKRTSFLLVALAIAGVVAGTAISATTTPRHASILIRHETHGCHSWSANGGAFKASQSITLRRGGSLTVTNNDVMPHRLVLTRGPALRITNAMLSHMGASVKVILSKPGVYHFTTKPGEDYMSGVKTTGEDNVLR

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