Scaffold A5_c1_ConsensusfromContig38600

Overview

Basic Information

• Taxon OID: 2124908044
• Scaffold ID: A5_c1_ConsensusfromContig38600
• Source Dataset Name: Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1222
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location

• Location Name: Bonanza creek, Alaska, USA
• Coordinates
  • Lat. (^o): 64.7
  • Long. (^o): -148.3
  • Depth (m): .3 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051778	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
A5_c1_01044960	F051778	GGA	MTLSDTGKSAVHWTPAATSISEIAKLTAPKKITTARSSAFQKQVWDFTTVLQSYRMASNGELVFQLFDVPTSTYMNAYLPSSQCLPKTTRGRAQILATRNAFLSQCPAPTVNWQPLGATAAVSGVGFWNSVKTTAGASKNGAELRPMLTLNIKQGCGKF