NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold A5_c1_ConsensusfromContig33878

Scaffold A5_c1_ConsensusfromContig33878


Overview

Basic Information
Taxon OID2124908044 Open in IMG/M
Scaffold IDA5_c1_ConsensusfromContig33878 Open in IMG/M
Source Dataset NameSoil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1675
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m).3 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004294Metagenome / Metatranscriptome445Y
F006205Metagenome / Metatranscriptome379Y

Sequences

Protein IDFamilyRBSSequence
A5_c1_01627980F004294N/AMECWLITSRAEVMRLEFGEEPPPEICLPDKPLSEIEDNATQKAIQDAPYLIYSRFHLAHESWRLGIVYSVAPPTVGDIQILSAYRAGHEARPHLA
A5_c1_01627990F006205AGGAGMDDIKQTLDKLREELTSAGKRLAELVEKAEGELPAAGKRINEEYLRLQALLDSAVDKLRN

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